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@DeepGraphLearning

MilaGraph

Research group led by Prof. Jian Tang at Mila-Quebec AI Institute (https://mila.quebec/) focusing on graph representation learning and graph neural networks.

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  1. torchdrugtorchdrugPublic

    A powerful and flexible machine learning platform for drug discovery

    Python 1.5k 205

  2. ULTRAULTRAPublic

    A foundation model for knowledge graph reasoning

    Python 529 71

  3. GMNNGMNNPublic

    Graph Markov Neural Networks

    Python 408 100

  4. GearNetGearNetPublic

    GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)

    Python 287 28

  5. NBFNetNBFNetPublic

    Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)

    Python 211 30

  6. ConfGFConfGFPublic

    Implementation of Learning Gradient Fields for Molecular Conformation Generation (ICML 2021).

    Python 165 37

Repositories

Showing 10 of 49 repositories
  • GearBind Public

    Pretrainable geometric graph neural network for antibody affinity maturation

    DeepGraphLearning/GearBind’s past year of commit activity
    Python 52 Apache-2.0 7 7 0 UpdatedMar 18, 2025
  • scCello Public

    [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model

    DeepGraphLearning/scCello’s past year of commit activity
    Python 15 1 0 1 UpdatedMar 12, 2025
  • ProteinTutorial_AAAI2025 Public

    https://deepgraphlearning..io/ProteinTutorial_AAAI2025/

    DeepGraphLearning/ProteinTutorial_AAAI2025’s past year of commit activity
    CSS 5 MIT 0 0 0 UpdatedFeb 27, 2025
  • ULTRA Public

    A foundation model for knowledge graph reasoning

    DeepGraphLearning/ULTRA’s past year of commit activity
    Python 529 MIT 71 2 0 UpdatedFeb 3, 2025
  • GraphAny Public

    GraphAny: Fully-inductive Node Classification on Arbitrary Graphs

    DeepGraphLearning/GraphAny’s past year of commit activity
    Python 134 MIT 15 1 1 UpdatedFeb 3, 2025
  • S3F Public

    Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)

    DeepGraphLearning/S3F’s past year of commit activity
    Python 33 MIT 3 3 0 UpdatedDec 3, 2024
  • MATH60630A_2024A Public
    DeepGraphLearning/MATH60630A_2024A’s past year of commit activity
    SCSS 0 0 0 0 UpdatedNov 21, 2024
  • torchdrug Public

    A powerful and flexible machine learning platform for drug discovery

    DeepGraphLearning/torchdrug’s past year of commit activity
    Python 1,498 Apache-2.0 205 110 (1 issue needs help) 11 UpdatedAug 12, 2024
  • graphvite Public

    GraphVite: A General and High-performance Graph Embedding System

    DeepGraphLearning/graphvite’s past year of commit activity
    C++ 1,251 Apache-2.0 154 54 0 UpdatedJun 14, 2024
  • esm-s Public

    Structure-Informed Protein Language Model

    DeepGraphLearning/esm-s’s past year of commit activity
    Python 32 4 3 0 UpdatedFeb 15, 2024
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